Discovery of a Potent and Cell-Active Inhibitor of DNA 6mA Demethylase ALKBH1.

N6-Methyladenine (6mA) of DNA has emerged as a novel epigenetic mark in eukaryotes, and several 6mA effector proteins have been identified. However, efforts to selectively inhibit the biological functions of these effector proteins with small molecules are unsuccessful to date. Here we report the first potent and selective small molecule inhibitor (13h) of AlkB homologue 1 (ALKBH1), the only validated 6mA demethylase. 13h showed an IC50 of 0.026 ± 0.013 µM and 1.39 ± 0.13 µM in the fluorescence polarization (FP) and enzyme activity assay, respectively, and a KD of 0.112 ± 0.017 µM in the isothermal titration calorimetry (ITC) assay. The potency of 13h was well explained by the cocrystal structure of the 13h-ALKBH1 complex. Furthermore, 13h displayed excellent selectivity for ALKBH1. In cells, compound 13h and its derivative 16 were able to engage ALKBH1 and modulate the 6mA levels. Collectively, our study identified the first potent, isoform selective, and cell-active ALKBH1 inhibitor, providing a tool compound for exploring the biological functions of ALKBH1 and DNA 6mA.

Targeting autophagy drug discovery: Targets, indications and development trends.

Autophagy plays a vital role in sustaining cellular homeostasis and its alterations have been implicated in the etiology of many diseases. Drugs development targeting autophagy began decades ago and hundreds of agents were developed, some of which are licensed for the clinical usage. However, no existing intervention specifically aimed at modulating autophagy is available. The obstacles that prevent drug developments come from the complexity of the actual impact of autophagy regulators in disease scenarios. With the development and application of new technologies, several promising categories of compounds for autophagy-based therapy have emerged in recent years. In this paper, the autophagy-targeted drugs based on their targets at various hierarchical sites of the autophagic signaling network, e.g., the upstream and downstream of the autophagosome and the autophagic components with enzyme activities are reviewed and analyzed respectively, with special attention paid to those at preclinical or clinical trials. The drugs tailored to specific autophagy alone and combination with drugs/adjuvant therapies widely used in clinical for various diseases treatments are also emphasized. The emerging drug design and development targeting selective autophagy receptors (SARs) and their related proteins, which would be expected to arrest or reverse the progression of disease in various cancers, inflammation, neurodegeneration, and metabolic disorders, are critically reviewed. And the challenges and perspective in clinically developing autophagy-targeted drugs and possible combinations with other medicine are considered in the review.

A novel heterometallic ruthenium-silver complex as potential antitumor agent: Studies on its synthesis, in vitro assays and interactions with biomolecular targets.

Certain ruthenium compounds are found to be potent growth inhibitors for cancer cells. In the current study, a novel ruthenium-triphenylphosphine (PPh3) cation and silver-2-mercapto nicotinate acid (H2mna) anion complex (RSC) was synthesized, and its molecular structure was determined by IR, NMR and X-ray crystallography. Biological assays revealed that RSC strongly inhibited the viability of MCF-7 and MDA-MB-231 cells with IC50 values of 9.6±1.1 and 7.5±0.8 µM, respectively, and significantly blocked their migration rates. Ultraviolet spectroscopy and fluorescence emission experiments demonstrated that RSC interacted with BSA, but not DNA. Further studies on [Ag6(Hmna)2(mna)4]4- binding with BSA and DNA found the anion did not interact with these biomolecules, indicating that RSC exerted its biological functions through its ruthenium-PPh3 complex (RTC) moiety, and molecular docking provided additional evidence supporting this result. Fluorescence resonance energy transfer showed that the number of binding sites (n) and binding constant of RTC-BSA complex were 1 and 8.60 × 104 M-1 at 310K, suggesting a strong interaction between RTC and BSA. The thermodynamic parameters ΔG0, ΔH0 and ΔS0 of the binding were calculated, and it was demonstrated that the binding of RTC with BSA was enthalpy-driven, and the main forces between RTC and BSA were electrostatic force and hydrogen bonding. Molecular docking showed that the binding site of BSA with RSC was located on the interface between the domains IIA and IIB of the protein. The present study sheds light on that a ruthenium mono-coordinated with PPh3 complex could help to design and develop a new class of antitumor drugs.